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From: TSS (216-119-139-126.ipset19.wt.net)
Subject: Re: Molecular Basis of Barriers for Interspecies Transmissibility of Mammalian Prions [FULL TEXT]
Date: April 8, 2004 at 7:31 pm PST
In Reply to: Molecular Basis of Barriers for Interspecies Transmissibility of Mammalian Prions posted by TSS on April 8, 2004 at 11:18 am:
-------- Original Message -------- Subject: Molecular Basis of Barriers for Interspecies Transmissibility of Mammalian Prions [FULL TEXT] Date: Thu, 08 Apr 2004 21:28:11 -0500 From: "Terry S. Singeltary Sr." To: bse-l Molecular Cell, Vol. 14, 139145, April 9, 2004, Copyright ?2004 by Cell Press Short Article Molecular Basis of Barriers for Interspecies Transmissibility of Mammalian Prions barriers in prion propagation has been brought to the public eye by recent epidemics of mad cow disease and concerns regarding potential transmission of animal prion diseases to humans (Bruce et al., 1997; Hill et al., 1997). However, the molecular basis of the species David L. Vanik,1 Krystyna A. Surewicz,1 and Witold K. Surewicz* Department of Physiology and Biophysics and Department of Chemistry Case Western Reserve University Cleveland, Ohio 44106 barrier and its relationship to prion strain specificity remain poorly understood. Recent experiments have provided a wealth of information about prion-like phenomena in yeast and fungi Summary (Chien and Weissman, 2001; Chien et al., 2003; Derkatch et al., 1996; Uptain and Lindquist, 2002; Wickner et al., Spongiform encephalopathies are believed to be transmitted by a unique mechanism involving self- 2000). However, studies aimed at understanding the mechanism of mammalian prion propagation, in general, propagating conformational conversion of prion protein into a misfolded form. Here we demonstrate that and molecular aspects of species barrier and strain diversity, in particular, have been hampered by difficulties fundamental aspects of mammalian prion propagation, including the species barrier and strain diversity, in propagating the PrPC?PrPSc conversion in vitro. The cell-free conversion assay developed by Caughey and can be reproduced in vitro in a seeded fibrillization of the recombinant prion protein variant Y145Stop. Our coworkers has provided fundamentally important insight into molecular barriers in the transmissibility of data show that species-specific substitution of a single amino acid in a critical region completely changes TSE agents (Bessen et al., 1995; Caughey, 2001; Kocisko et al., 1995; Raymond et al., 1997). However, an intrinsic the seeding specificity of prion protein fibrils. Furthermore, we demonstrate that sequence-based barriers limitation of this assay is that the conversion yields are perplexingly low, below the level required to sustain that prevent cross-seeding between proteins from different species can be bypassed, and new barriers es- continuous self-propagation of the prion state. These yields could be improved in the presence of additional tablished, by a template-induced adaptation process that leads to the emergence of new strains of prion cellular cofactors (Lucassen et al., 2003). Recently, we have shown that, in contrast to the recombinant full- fibrils. Although the seeding barriers observed in this study do not fully match those seen in animals, the length human prion protein, the Y145Stop mutant (huPrP23144), which is associated with a familial prion present findings provide fundamental insight into mechanistic principles of these barriers at a molecu- disease, undergoes an efficient nucleation-dependent conversion to the amyloid state in vitro (Kundu et al., lar level. 2003). Limited attempts to transmit this variant of the disease to mice have not yet been successful (Tateishi Introduction et al., 1996). Nevertheless, the huPrP23144 model opens up new possibilities for studying the propagation Transmissible spongiform encephalopathies (TSEs) are a group of fatal neurodegenerative diseases that affect of conformationally altered PrP states in vitro. Here, we have used this system to explore the molecular basis humans and animals. These disorders are associated with conformational conversion of the cellular prion pro- of the species barrier and its relationship to prion strains. tein, PrPC, into an abnormal form, PrPSc (Caughey and Chesebro, 2001; Collinge, 2001; Prusiner, 1998). The Results latter protein is characterized by a high content of sheet structure, partial resistance to proteolytic diges- Fibrillization and Seeding Specificity of PrP23144 tion, and a propensity to aggregate into amyloid-like Is Strongly Species Dependent fibrils and plaques. The protein-only hypothesis asserts We first asked how species-dependent differences in that the transmission of TSEs does not require nucleic the primary structure affect the propagation and seeding acids and that PrPSc itself is the infectious agent (Prusi- specificity of the amyloid state of PrP23144. To address ner, 1982, 1998). This highly unusual pathogen is be- this issue, we expressed and purified recombinant prolieved to self-propagate by binding to cellular prion pro- teins corresponding to residues 23144 of human (hu), tein and catalyzing its conversion to PrPSc. Within the mouse (mo), and Syrian hamster (Sha) prion proteins. context of this model, two features of TSEs are particu- The conversion of these proteins to amyloid fibrils was larly perplexing. The first one is the existence of multiple followed by the thioflavine T (ThT) fluorescence assay prion strains that produce distinct disease phenotypes (Naiki et al., 1989). Consistent with our recent study within the same animal species (Bruce and Fraser, 1991). (Kundu et al., 2003), huPrP23144 formed self-seeded The second is the species barrier that restricts transmis- fibrils through a process characterized by distinct lag sion of prion diseases between different mammalian and growth phases. Under the present experimental species (for a review see Collinge, 2001). The issue of conditions, this lag phase was approximately 3.6 hr (Figure 1). A similar conversion was observed for the mouse and hamster proteins. However, the lag phases were *Correspondence: witold.surewicz@case.edu 1These authors contributed equally to this work. dramatically different, increasing to approximately 16 hr Molecular Cell 140 We next examined the efficiency of seeding between proteins belonging to different species. Human and mouse proteins were found to be fully compatible, i.e., huPrP23144 fibrils readily seeded mouse protein and moPrP23144 fibrils acted as an efficient seed for fibrillization of human PrP23144 (Figures 2A and 2B). In contrast, a strong barrier was found between human and hamster proteins. The lag phases for huPrP23144 fibrillization in the presence of ShaPrP23144 seeds, or ShaPrP23144 polymerization in the presence of huPrP23144 seeds were very similar to those for nonseeded reactions (Figures 2A and 2C), indicating that no cross-seeding occurs between human and hamster PrP23144. Similar cross-seeding experiments between mouse and Syrian hamster PrP23144 revealed an intriguing asymmetry in seeding specificity for this pair of proteins. While preformed ShaPrP23144 fibrils readily seed polymerization of mouse protein, fibrilar moPrP23 144 shows no detectable capacity to nucleate the conversion of ShaPrP23144 (Figures 2B and 2C). Amino Acids at Position 138 and 139 Are Critical Determinants of Species-Dependent Seeding Specificity The data shown above demonstrate substantial differences in amyloidogenic propensities of PrP23144 corresponding to human, mouse, and Syrian hamster sequences and, most importantly, indicate remarkable specificity in cross-seeding between proteins that belong to different species. As shown in Figure 3, there are a number of amino acid differences between human, mouse, and hamster PrP23144. However, our recent study points to a critical role in huPrP23144 conversion of a very short segment encompassing amino acid resi- Figure 1. Spontaneous Fibrillization of PrP23144 Representing Dif- dues 138141 (Kundu et al., 2003). Two positions ferent Species within this segment138 and 139show species- (A) Time course of the increase in thioflavine T fluorescence in the dependent variability (Figure 3). In human protein both presence of huPrP23144 (), moPrP23144 (), ShaPrP23144 (), positions are occupied by isoleucine, while in mouse I138M huPrP23144 (), and I138M/I139M huPrP23144 (). The PrP Ile138 is replaced by methionine. Syrian hamster kinetic curves were obtained in 50 mM phosphate buffer (pH 6.4) protein shows further divergence from human PrP, with at a protein concentration of 400 M. (B) Mean values of lag phases for nonseeded fibrillization based on Met present both at position 138 and 139. This suggests four to eleven experiments. a potentially crucial role for residues 138 and/or 139 in (C) Electron micrograph showing fibrils of huPrP23144. The bar determining the species-dependent specificity of corresponds to 200 nm. The electron micrographs for mouse and PrP23144 conformational conversion. Syrian hamster proteins showed similar morphology of amyloid fi- To test this hypothesis, we have prepared two brils. huPrP23144 variants: one in which Ile138 was replaced by Met and one in which both Ile138 and Ile139 were for moPrP23144 and 38 hr for ShaPrP23144 (Figures substituted with Met. As shown in Figure 1, the single 1A and 1B). In each case, the formation of fibrils was I138M mutation had a profound effect on the rate of confirmed by electron microscopy (Figure 1C). spontaneous huPrP23144 fibrillization extending the Addition of a small amount (2% w/w) of preformed lag phase from 3.6 to 18 hr, very similar to that observed huPrP23144 fibrils to the solution of the monomeric for moPrP23144. In the case of the double mutant huPrP23144 resulted in elimination of the lag phase I138M/I139M, the lag phase was further increased to (Figure 2A). Similar behavior was observed for both 39 hr, becoming very similar to that found for sponta- moPrP23144 and ShaPrP23144. Even though the lag neous fibrillization of hamster prion protein. Guided by phases for spontaneous fibrillization of these proteins these findings, we next tested the seeding specificity were much longer, these lag phases were completely of the single and double mutants of huPrP23144. Also abolished when 2% w/w preformed moPrP23144 or in this regard, the behavior of the I138M and I138M/ ShaPrp23144 fibrils were added to solutions containing I139M variants paralleled the properties of moPrP23 monomers of the respective proteins (Figures 2B and 144 and ShaPrP23144, respectively. Akin to moPrP23 2C). These results indicate that in all three cases fibril 144, the fibrillar form of the I138M variant efficiently formation requires oligomeric seeds and has characterseeded fibrillization of moPrP23144 and huPrP23144, istics of nucleation-dependent polymerization (Come et al., 1993). but could not seed the conversion of Syrian hamster Molecular Basis of Barriers in Prion Propagation 141 Figure 2. Species- and Mutation-Dependent Seeding Specificities of PrP23144 Amyloid Fibrils (AC) Human (hu), mouse (mo), and Syrian hamster (Sha) PrP23144 seeded with preformed fibrils of proteins representing different species. Seeds of huPrP23144, moPrP23144, and ShaPrP23144 are denoted as [hu], [mo], and [Sha], respectively. (DF) Human, mouse, and Syrian hamster proteins seeded with preformed fibrils of I138M and I138M/I139M variants of huPrP23144. I138M huPrP23144 and I138M/I139M huPrP23144 seeds are denoted as [138] and [138/139], respectively. (G and H) I138M huPrP23144 and I138M/I139M huPrP23144 seeded with preformed fibrils of I138M and I138M/I139M variants of huPrP23144. Each experiment was repeated at least four times. protein. Furthermore, akin to ShaPrP23144, preformed served when I138M/I139M variant was incubated in the I138M/I139M huPrP23144 fibrils seeded fibrillization of presence of I138M huPrP23144 fibrils (Figures 2G and ShaPrP23144 and moPrP23144, but failed to seed 2H). Thus, these data demonstrate that mouse or hamhuman PrP23144 (Figures 2D2F). Finally, analogous ster PrP-specific amino acid substitutions at position to the behavior of the moPrP23144-ShaPrP23144 pair, 138 and 139 are sufficient to change essential amyloidothe double mutant fibrils readily seeded polymerization genic properties of huPrP23144, with the mutant proof the single mutant protein, but no seeding was ob- teins adopting seeding specificities of PrP corresponding to different species. To further test the role of residues 138 and 139 in PrP23144 fibrillization, we have performed a series of experiments with Syrian hamster protein in which both Met138 and Met139 were substituted with human PrPspecific Ile residues (Figure 3). The lag phase for nonseeded conversion of this humanized ShaPrP23144 Figure 3. Sequence Comparison for Human (hu), Mouse (mo), and dropped from 38 hr to approximately 3.5 hr, a value very Syrian Hamster (Sha) PrP Highlighting Amino Acid Differences in the 23144 Region similar to that found for huPrP23144. Furthermore, the Molecular Cell 142 [mo]Sha to seed fibrillization of hamster PrP is not due to residual ShaPrP23144 seeds which are present at a concentration of 0.04%, an amount far too small to affect the conversion reaction. Furthermore, residual ShaPrP23 144 seeds obviously could not account for the lost ability of [mo]Sha to nucleate conversion of human prion protein. As expected from the data of Figure 2B, the second generation [mo]Sha fibrils could also nucleate conformational conversion of moPrP23144. Importantly, the thirdgeneration product of this reaction retained the seeding specificity of [mo]Sha, i.e., it could nucleate the conversion of ShaPrP23144, but not that of huPrP23144 (data not shown for brevity). The only logical explanation of the present data is that the properties of second-generation moPrP23144 fibrils prenucleated with ShaPrP23144 seeds are different from those of moPrP23144 fibrils formed spontaneously or those nucleated with moPrP23 144 seeds. Clearly, seeding with hamster PrP led to the formation of a new strain of moPrP23144 fibrils. This newstrain acquired the templating properties of the parent seed and stably propagated in subsequent rounds of seeded fibrillization. Importantly, the altered templating properties allowed the new strain to overcome the origi- Figure 4. The Emergence of New Strains of PrP Amyloid Fibrils with nal barrier in cross-seeding the conversion between pro- Different Seeding Specificities teins belonging to different species. (A and B) Second generation fibrils of moPrP23144 were obtained The remarkable ability of PrP23144 fibrils to propa- by seeding moPrP23144 with preformed fibrils of ShaPrP23144. gate in vitro as different strains could also be demon- These second generation fibrils, denoted [mo]Sha, could not seed strated using the I138M and I138M/I139M variants of huPrP23144 (A) but seeded ShaPrP23144 (B). (C and D) Second generation fibrils of I138M huPrP23144 were human prion protein. Thus, second-generation fibrils of obtained by seeding I138M huPrP23144 with preformed fibrils of I138M huPrP23144 preseeded with the I138M/I139M I138M/I139M huPrP23144. These second generation fibrils, de- variant acquired the properties of the seed: unlike originoted [138]138/139, were used to seed either huPrP23144 (C) or I138M/ nal I138M huPrP23144 fibrils, they could nucleate poly- I139M huPrP23144 (D). First generation seeds of moPrP23144, merization of the I138M/I139M variant (or ShaPrP23 and I138M huPrP23144 are denoted as [mo] and [138], respectively. 144), but not that of the wild-type huPrP23144 (see Both [mo]Sha and [138]138/139 could seed moPrP23144 and I138M huPrP23144 (data not shown for brevity). Each experiment was Figures 4C and 4D). repeated at least four times. Discussion mutation completely altered the seeding specificity of Studies with transgenic animals have demonstrated that the protein: preformed M138I/M139I ShaPrP23144 fi- species barriers for TSE transmissibility are closely rebrils could no longer seed Syrian hamster protein but lated to differences in prion protein amino acid seacquired the ability to seed huPrP23144 (data not quences between the donors and recipients of infection shown for brevity). Thus, M138I/M139I ShaPrP23144 (Scott et al., 1993). The importance of sequence homoladopted the properties of human PrP23144. ogy in prion propagation has also been underscored in experiments in vitro. Following the initial observation with short synthetic PrP fragments (Come et al., 1993), Cross-Seeding Leads to the Emergence of New Strains of PrP23144 Fibrils sequence specificity of PrPC-PrPSc interactions has been extensively documented in a series of studies employing The asymmetry in seeding specificity observed for the moPrP23144-ShaPrP23144 pair (Figures 2B and 2C) noncontinuous cell-free conversion assay (Caughey, 2001; Kocisko et al., 1995; Raymond et al., 1997), as well provided us with the unique opportunity to study the relationship between the species barrier and strain di- as in experiments with scrapie-infected neuroblastoma cells (Priola and Chesebro, 1995; Priola et al., 2001). The versity. To this end, we have seeded moPrP23144 with ShaPrP23144 fibrils, and used the product of this reac- present data provide a new insight into the relationship between PrP sequence and species barriers, pointing tiondenoted [mo]Shaas second-generation seeds to nucleate polymerization of human, mouse, and hamster to the extremely tight control of prion protein conversion by individual amino acid residues. Remarkably, species- proteins. If these second-generation moPrP23144 fibrils retain the original properties of mouse protein, they specific substitution of a single amino acid in the critical region of human or hamster PrP23144 is sufficient to should seed huPrP23144, but not ShaPrP23144. Data of Figure 4 clearly show that this is not the case. The completely change the behavior of these polypeptides, with mutant polypeptides acquiring fibrillization kinetics second-generation moPrP23144 fibrils, [mo]Sha, have lost the ability to seed fibrillization of human prion pro- and seeding specificities of proteins corresponding to different species. Apart from implications for a molecu- tein and have gained the ability to nucleate fibrillization of hamster PrP23144. This newly acquired capacity of lar basis of the species barrier, the finding that point Molecular Basis of Barriers in Prion Propagation 143 mutations can drastically alter seeding specificity of mately related phenomena is in line with the observations regarding transmission of BSE and CJD prions to prion protein may also help to explain puzzling differences in infectivity of inherited prion diseases. While experimental animals (Collinge, 2001). The present study was performed using the C-trun- sporadic Creutzfeldt-Jakob disease (CJD) and many familial CJD cases can be readily transmitted to primates cated PrP23144 variant that corresponds to a rare form of familial prion disease. Similar studies with the recom- and transgenic mice, attempts to transmit other forms of hereditary prion diseases have not yet been successful binant full-length PrP have not yet been feasible due to practical difficulties in propagating efficient seeded (Kong et al., 2004). The latter group includes the Y145Stop variant, as well as most familial GSS cases with conversion of the latter protein, although certain aspects of seeded conversion of PrP23231 or PrP90231 could point mutations. It is possible that some of these mutations could affect the seeding specificity of the prion be reproduced using a reduction-oxidation process (Lee and Eisenberg, 2003), or under conditions requiring high protein, creating new transmissibility barriers that prevent disease transmission to wild-type animals. Con- concentrations of denaturants and very vigorous shaking (Baskakov, 2003). The apparently low conversion ceivably, transmission of such cases could only be possible in animals carrying prion protein with a mutation propensity of the full-length PrP may reflect evolutionary selection toward preventing conversion of this ubiqui- matching that of the donor. It is well recognized that passage of prions through tous protein into the extremely toxic PrPSc state, likely by shielding of critical amyloidogenic determinant(s) by animals may lead to the establishment of new prion strains (for a review see Bruce and Fraser, 1991; Col- intramolecular contacts with the folded C-terminal domain (Kundu et al., 2003). Although the crucial role of linge, 2001). The existence of multiple prion strains has for many years presented a major challenge to the pro- amino acid residue 139 (equivalent to 138 in mouse or 142 in goat PrP) in prion protein conversion is in line tein-only hypothesis, providing arguments for models advocating scrapie-specific nucleic acids. It was only with previous observations in scrapie-infected neuroblastoma cells (Priola and Chesebro, 1995) and animal recently that experimental data started to emerge suggesting that multiple prion strains could be rationalized studies (Goldmann et al., 1996), it should be noted that the seeding barriers in the present study with PrP23144 within the framework of the protein-only model, with individual strains likely representing different PrPSc con- do not fully match the pattern of transmission barriers observed in vivo. In particular, mice appear to be resis- formations (Bessen and Marsh, 1994; Parchi et al., 2000; Peretz et al., 2002; Telling et al., 1996; Safar et al., 1998). tant to hamster prions (Kimberlin and Walker, 1978), whereas no barrier was observed for seeding of Here we have shown that the phenomenon reminiscent of prion strain diversity, as observed in animal studies, moPrP23144 with ShaPrP23144 fibrils. The lack of a perfect match is not at all surprising since, in addition can be reproduced in a simple system consisting solely of highly purified mammalian prion protein variant. This to residues 138/139, amino acids beyond the 23144 region of PrP are also known to play a role in the species in vitro system provided us with the unique opportunity to explore the molecular basis of strain diversification, barrier for prion transmission (Caughey, 2001; Kocisko et al., 1995; Priola et al., 2001; Scott et al., 1993). Further- as well as the relationship between strains and barriers for interspecies transmissibility of mammalian prions. more, chaperone proteins or other cellular cofactors may be involved in the species specificity in vivo. How- While reaffirming the importance of individual amino acids in PrP as determinants of the species barriers, ever, the purpose of the present study was not to quantitatively reproduce the pattern of naturally occurring spe- the present study clearly demonstrates that sequence compatibility between host prion protein and the donor cies barriers but, rather, to develop a model for understanding basic mechanistic principles of these of infection is only part of the equation. As shown in our experiments, original sequence-based barriers that barriers at a molecular level. This model allowed us to demonstrate a very close relationship between species prevent cross-seeding of conformational conversion between proteins representing species A and B may be barriers and strains, revealing the mechanism of an adaptation process that leads to the emergence of new readily bypassed and new barriers may be established by a simple adaptation process. This process, involving prion strains which can bypass original sequence-based barriers for interspecies transmissibility of mammalian preseeding of protein A with PrP23144 fibrils corresponding to the third species C, leads to the emergence prions. The findings for the C-truncated PrP variant are conceptually similar to those recently reported for a of a new strain of fibrils A. Remarkably, even though this new strain has the amino acid sequence of PrP structurally unrelated yeast protein Sup35, the determinant of the yeast prion state [PSI] (Chien and Weiss- corresponding to species A, it adopts seeding specificity of protein C. Given the identity of protein primary man, 2001; Chien et al., 2003). This striking similarity strongly suggests that the mechanistic principles estab- structure in both strains, the altered seeding specificity of the new strain must be rooted in different fibril confor- lished in our model are of general validity, also applying to the full-length mammalian prion protein. mation. The precise nature of conformational differences that determine seeding specificity of individual The principle of strain adaptability could explain some of the most puzzling observations regarding mammalian strains is under current investigation. Regardless of the nature of these differences, the present data strongly prion propagation in vivo, including that of species-specific differences in transmissibility of classical human suggests that barriers in TSE transmissibility are not so much a simple function of species-dependent differ- CJD and vCJD prions (Bruce et al., 1997; Collinge, 2001; Hill et al., 1997). While classical CJD prions encounter ences in PrP primary sequence but, rather, they are a conformational property of individual prion strains. The a significant barrier for transmission to wild-type mice, they transmit very efficiently to transgenic mice express- notion that species barriers and prion strains are inti- Molecular Cell 144 Received: January 5, 2004 ing only human PrP. In contrast, vCJD prions transmit Revised: February 5, 2004 readily to wild-type mice, whereas their transmission to Accepted: February 13, 2004 transgenic mice is relatively inefficient. The transmission Published: April 8, 2004 properties of vCJD are very similar to those of BSE prions, indicating that vCJD represents a strain of hu- References man prion that emerged by infection with BSE prions. Baskakov, I.V. (2003). Autocatalytic conversion of recombinant prion The apparent ability of prion strains to adopt different protein displays a species barrier. J. Biol. 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The plasmid encoding huPrP23231 with N-terminal linker con- Bruce, M.E., Will, R.G., Ironside, J.W., McConnell, I., Drummond, D., taining a His6 tail and a thrombin cleavage site was described pre- Suttie, A., McCardie, L., Chree, A., Hope, J., Birkett, C., et al. (1997). viously (Morillas et al., 1999). Plasmids for the expression of Transmissions to mice indicate that new variant CJD is caused moPrP23144 and ShaPrP23144 were kindly provided by Dr. Robby the BSE agent. Nature 389, 498501. ert Petersen. Constructs for the expression of the I138M and I138M/ I139M variants of huPrP23144, as well as the I138M/I139M variant Caughey, B. (2001). Interactions between prion protein isoforms: of ShaPrP32144, were prepared by site-directed mutagenesis us- the kiss of death. Trends Biochem. Sci. 26, 235242. ing appropriate primers and a QuikChange kit (Stratagene). The final Caughey, B., and Chesebro, B. (2001). Transmissible spongiform constructs were confirmed by sequencing the coding region. The encephalopathies and prion protein interconversions. Adv. Virus proteins were expressed in E. coli and purified essentially as de- Res. 56, 277311. scribed previously using a nickel-nitrilotriacetic acid agarose resin Chien, P., and Weissman, J.S. (2001). Conformational diversity in a (Morillas et al., 1999), with the exception that no glutathione was yeast prion dictates its seeding specificity. Nature 410, 223227. present in the refolding buffer. The N-terminal 6xHis tag was cleaved Chien, P., DePace, A.H., Collins, S.R., and Weissman, J.S. (2003). with biotinylated thrombin (Novagen), followed by removal of throm- Generation of prion transmission barriers by mutational control of bin using streptavidin-agarose beads. The free-polyhistidine tag amyloid conformations. Nature 424, 948951. was removed by dialysis against distilled water, followed by lyophilization. The purity of the final products was better than 98% as Collinge, J. (2001). 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All samples contained a cocktail of proteinase caprine PrP gene: a codon 142 mutation associated with scrapie inhibitors. Small aliquots of each sample were withdrawn at different incubation period. J. Gen. Virol. 77, 28852891. time points and diluted to a final concentration of 4 M in the same Hill, A.F., Desbruslais, M., Joiner, S., Sidle, K.C.L., Gowland, I., and buffer containing 10 M ThT. After mixing, the fluorescence of ThT Collinge, J. (1997). The same prion strain causes vCJD and BSE. dye was measured at 482 nm using an excitation wavelength of 450 Nature 389, 448450. nm. In the seeded reaction, a small amount (2% w/w) of preformed fibrillar aggregates was added to freshly buffered protein solution, Kimberlin, R.H., and Walker, C.A. (1978). Evidence for the transmisand the kinetics of fibril formation were followed as described above. sion of one source of scrapie agent to hamster involves separation In order to break up very large aggregates, the fibrillar protein used of agent strains from a mixture. J. Gen. Virol. 39, 487496. for seeding was sonicated in a bath-type sonicator. In some experi- Kocisko, D.A., Priola, S.A., Raymond, G.J., Chesebro, B., Lansbury, ments, at the late stages of fibrillization there was some scattering P.T., Jr., and Caughey, B. (1995). Species specificity in the cell-free of the fluorescence signal. Furthermore, after reaching its maximum, conversion of prion protein to protease-resistant forms: a model for the ThT fluorescence often showed a time-dependent decrease the scrapie species barrier. Proc. Natl. Acad. Sci. USA 92, 3923 caused by clumping of individual fibrils into very large aggregates. 3927. Although the clumping showed considerable variability among indi- Kong, Q., Surewicz, W.K., Petersen, R.B., Zou, W., Chen, S.G., Gam- vidual protein samples, it was generally much less severe for betti, P., Parchi, P., Capellari, S., Goldfarb, L., Montagna, P., et moPrP23144 than for the human or Syrian hamster proteins. The al. (2004). Inherited prion diseases. In Prion Biology and Diseases, percent change of ThT fluorescence was calculated as (F FO)/ Second Edition, S.B. Prusiner, ed. (Cold Spring Harbor, NY: Cold (Fmax FO) 100, where FO is the fluorescence of ThT alone, and F Spring Harbor Laboratory Press), pp. 673775. and Fmax represent the value at a given time point and the maximum Kundu, B., Maiti, N.R., Jones, E.M., Surewicz, K.A., Vanik, D.L., and fluorescence reached by the sample, respectively. Since the clump- Surewicz, W.K. (2003). Nucleation-dependent conformational con- ing of fibrils occurred only at late stages of the reaction, it did not version of the Y145Stop variant of human prion protein: structural affect the accuracy of the measurements of lag phases. clues for prion propagation. Proc. Natl. Acad. Sci. USA 100, 12069 12074. Acknowledgments Lee, S., and Eisenberg, D. (2003). Seeded conversion of recombinant prion protein to a disulfide-bonded oligomer by a reduction-oxida- We thank R. Petersen for providing plasmids for expression of retion process. Nat. Struct. Biol. 10, 725730. combinant mouse and hamster PrP23144, and P. Gambetti, M. Buck, A. Komar, F. Soennichsen, V. Yee, and members of the Sure- Lucassen, R., Nishina, K., and Supattapone, S. (2003). In vitro amplification of protease-resistant prion protein requires free sulfhydryl wicz lab for discussions and critical reading of this manuscript. This work was supported by NIH grant NS 44158. groups. Biochemistry 42, 41274135. 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